MULTILOCUS GENOTYPING FOR DIVERSITY ANALYSIS IN MARATHWADA AND SURTI BUFFALOES (BUBALUS BUBALIS)
Vanshika Goel
Sainyam Goel
Vol. 2, Issue 1, Jan-Dec 2016
Page Number: 209 - 303
Abstract:
Conservation of indigenous animal genetic resources tops the list of prime livestock development activities for India. The conservation programs, especially followed by farmers are complementary and supplementary to the agricultural systems and have helped in agricultural production and food security in the country. The nomadic and semi-nomadic production system at zero input levels have helped in conservation of many of the indigenous breeds. The situation is far from satisfactory in terms of collection, computerization, collation and utilization of information on AnGR for their conservation. India sub-continent is a rich source of diverse live germplasm and only very few countries have such a large number of breeds with wide genetic diversity. These vast genetic resources are comprised of 10 breeds of buffaloes, 30 of cattle, 43 of sheep, 20 of goats, 7 of camel, 8 of horse, 19 of poultry and few types of pigs, yolks and other distributed in various agro climatic zone of the country
References
- Albert, B.; Bray, D.; Lewis, J.;Raff, M.; Robert, K. and Watson, J. D. (1994). Molecular Biology of the cell. Garland Publishing Inc.
- Ali S, Gauri, Bala S. Detection of genome specific monomorphic loci in Bos Taurus and Bubalus bubalis with oligodeoxyribonucleotide probe. Anim Genet. 1993 Jun; 24(3): 199-202.
- Allendorf F. W. 1986 Genetic drift and the loss of alleles versus heterozygosity. Zoo. Biol. 5, 653-662.
- Amos, W., S.J. Sawcer, R.W. Feakes, and D.C. Rubinsztein. 1996. Microsatellites show mutational bias and heterozygote instability. Nature Genet. 13:390-391.
- Bachtrog, D.; Weiss, S.; Zangerl, B.; Brem, G.; Schlotterer, C. (1999). Distribution of dineucleotide microsatellites in the Drosophila melanogaster genome. Molecular Biology and Evolutionary, 16: 602-610.
- Barker, J. S. F., Moore, S. S. Hetzel, D. J. S.; Evans, D., Tan, S. G. and Byrne, K. (1997). Genetic diversity of Asian water buffalo: Microsatellite variation and a comparison with protein coding loci. Animal genetic. 28: 103-115.
- Botstein, D., White, R. L. Skonick, M. and Davis, R. W. (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Human Genetic. 32: 314-331.
- Bowcock, A.M., Ruiz-Linares, A., Tomfohrde, J., Minch, E., Kidd, J.R., and Cavalli- Sforza, L.L. 1994. High resolution of human evolution with polymorphic microsatellites. Nature 368: 455- 457.
- Budowle, B., Giusti, A.M., Waye, J.S., Baechtel, F.S., Fourney, R.M., Adams, D.E., Presley, L.A., Deadman, H.A., and Monson, K.L. 1991. Fixed BIN analysis for statistical evaluation of continuous distributions of allele data form VNTR loci for use in forensic comparisons. Am. J. Hum. Genet. 48: 841-855.
- Callen, D.F., Thompson, A.D., Shen, Y., Phillips, H.A., Richards, R.I., Mulley, J.C., and Sutherland, G.R. 1993. Incidence and origin of 'null' alleles in the (AC) n microsatellite marker. Am. J. Hum. Genet. 52: 922-927.
- Cornuet J M and Luikart G. 1996. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144: 2001-14.
- Crow, J.F. 1993. How much do we know about spontaneous human mutation rates? Environmental Molecular Mutagen. 21: 122-129.
- Deka, R. et al. 1995. Population genetics of dinucleotide (dC-dA) n (dG-dT). Polymorphisms in world populations. Am. J Hum Genet. 56:461-474.
- Denniston C.1978. Small population size and genetic diversity. Implications for endangered species. Pp. 281-290. In: Endangered Birds: Management Techniques for Preserving Endangered Species, Edited by S. A. Temple. University of Wisconsin Press, Madison.
- Di Rienzo, A., Peterson, A.C., Garza, J.C., Valdes, A.M., Slatkin, M., and Freimer, N.B. 1994. Mutational processes of simple-sequence rep Dieringer, D., SchlÄotterer, C.: Two distinct modes of microsatellite mutation processes: evidence from the complete genomic sequences of nine species. Genome Research 13: 2242{2250 (2003).
- Dib, C. et al. 1996. A comprehensive genetic map of the human genome based on 5,264 microsatellties. Nature 380:152-154.
- Dietrich, W. et al. 1996. A comprehensive genetic map of the mouse genome. Nature 380:149- 152.
- Estoup, A., Tailliez, C., Cornuet, J. -M., and Solignac, M. 1995a. Size homoplasy and the mutational processes of interrupted microsatellites in two bee species, Apis mellifera and Bombus terrestrus (Apidae). Mol. Biol. Ecol. 12:1074-1084.
- FAO.1974.The husbandry and Health of The Domestic Buffalo. Ed. W.R.Cockrill. Food and Agriculture organization of the United Nations,Rome,Italy.
- Feldman, M.W., A. Bergman, D.D. Pollock, and D.B. Goldstein. 1996. Microsatellite genetic distances with range constraints Analytic description and problems of estimation. Genetics 145:207-216.
- Feldman, M.W., A. Bergman, D.D. Pollock, and D.B. Goldstein. 1996. Microsatellite genetic distances with range constraints Analytic description and problems of estimation. Genetics 145:207-216.
- Field, D.; Wills,C. (1996). Long, polymorphic microsatellite in simple organisms. Proceeding of Royal Society of London B, Biological Sciences. 263: 209-215.
- Goldstein, D.B., L.A. Zhivotovsky, K. Nayar, A. Ruiz Linares, L.L. Cavalli-Sforza, and M.W. Feldman. 1996. Statistical properties of the variation at linked microsatellite loci -- implications for the history of human Y-chromosome Mol. Biol. Evol. 13:1213-1218.
- Goldstein, D.B., Linares, A.R., Cavalli-Sforza, L.L., and Feldman, M.W. 1995a. An evaluation of genetic distances for use with microsatellite loci. Genetics 139: 463-471.
- Hochgeschwender, V. and N.B.Brennan. 1991. Identifying the genome new ways for finding the needle in a haystack. Bioassays. 13: 139-144.
- Iannuzzi L, Di Meo GP, Perucatti A, Schibler L, Incarnato D, Gallagher D, Eggen A, Ferretti L, Cribiu EP, Womack J. The river buffalo (Bubalus bubalis, 2n = 50) cytogenetic map: assignment of 64 loci by fluorescence in situ hybridization and R-banding. : Cytogenet Genome Res. 2003; 102(1-4): 65-75.
- Imperial Council of Agriculture Research, 1941: Definition of the characteristic of cattle and NiliRavi and Surti buffaloes Miscellaneous Bulletin No.47: 20.1
- Indian Council of Agriculture Research, 1960: Definition of the characteristic of cattle and buffalo breeds in India. New Delhi –Bulletin No. 86.
- Jafferys, A.J., V.Wilson and S.L.Thein. 1985. Hypervariable 'minisatellite' regions in human DNA. Nature. 314: 67-73.
- Jarne, Phillippe and Pierre J.L. Lagoda. 1996. “Microsatellites, form molecules to populations and back.” Trends in Evolution and Ecology, vol. 11, no. 10, October 1996, pp. 424-429.
- Jeffreys, A. F.; Murry, J.; Neumann, R. (1998). High resolution mapping of crossovers in human sperm defines a minisatellite-associated recombination hotspot. Molecular cell. 2:267-273.
- Kimura M and Crow JF, 1964. The number of alleles that be maintained in a finite population. Genetics 49:725-738.
- Kimura, M. and J.F. Crow. 1964. The number of alleles that can be maintained in a finite population. Genetics 49:725-738.
- Liu, L.; Dybvig, K.; Panangala, V. S.; Van, Santen, V. L.; French, C. T. (2000). GAA trinucleotide repeat region regulates M9*/pMGA gene expression in Mycoplasma gallsepticum. Infection and Immunity. 68: 871-876.
- Liu, Z.; Tan, G.; Li, P. Dunham, R. A. (1999). Transcribed dinucleotide microsatellites and their associated genes from channel catfish Ictalurus punctatus. Biological and Biophysical Research Communication. 259: 190-194.
- Luikart G, Allendorf F W, Cornuet J M and Sherwin W B. 1998. Distortion of allele frequency distributions provides a test for recent population bottlenecks. Journal of Heredity 89(3): 238- 47.
- Luikart G, Allendorf FW, Cornuet JM & Sherwin WB (1998) Distortion of allele frequency distributions provides a test for recent population bottlenecks. J Hered 89: 238-247.
- Luikart G. 1997. Usefulness of molecular markers for detecting population bottlenecks and monitoring genetic change. Ph. D. Thesis. University of Montana, Missoula, USA.
- Mattapallil MJ, Ali S. Analysis of conserved microsatellite sequences suggests closer relationship between water buffalo Bubalus bubalis and sheep Ovis aries. DNA
- Nair PG, Balkrishnan M, Yadu YR (1986) The Toda buffaloes of Nilgiris.Buffalo Journal, 2, 167-178.
- Neha (2006) Multilocus Genotyping for Diversity Analysis in Toda Buffaloes. Thesis submitted to Singhania Institute of Law Management Science and Technology, Pacheri Bari, Rajasthan.
- Nei M, Maruyama T and Chakraborty R. 1975. The bottleneck effect and genetic Nei, M. (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89:583-590.
- Ohta, T. (1982a) Linkage disequilibrium with the island model. Genetics. 101: 139-155.
- Paetkau, D. and Strobeck, C. 1994. Microsatellite analysis of genetic variation in black bear populations. Mol. Ecol. 3: 489-495.
- Paetkau, D. and Strobeck, C. 1995. The molecular basis and evolutionary history of a microsatellite null allele in bears. Mol. Ecol. 4: 519-520.
- Pollock, D.D., A. Bergman, M.W. Feldman and D.B. Goldstein. 1996. Microsatellite behavior with range constraints: Parameter estimation and improved distance estimation for use in phylogenetic reconstruction. Submitted to Theor. Popul. Biol.
- Queller, D.C., Strassmann, J.E., and Hughes, C.R. 1993. Microsatellites and Kinship. TREE 8: 285-2 Reynolds, J., Weir, B.S., and Cockerham, C.C. (1983) Estimation of the coancestry coefficient: basis for a short-term genetic distance. Genetics.
- Richard, G. F.; Paques,F. (2000). Mini and microsatellite expansions: the recombination connection. EMBO Reports, 11: 122-126.
- S.Kumar et al. (2006). Genetic variation and relationhip among eight Indian riverine Shriver, M.D., Jin, L., Chakraborty, R., and Boerwinkle, E. 1993. VNTR allele frequency distributions under the SMM: A computer simulation approach. Genetics 134: 983-993lihood approach to tting equilibrium models of microsatellite evolution. Mol. Biol. Evol. 18: 413{417
- Slatkin, M. 1991. Inbreeding coefficients and coalescence times. Genet. Res. 58: 167- 175.
- Stalling, R. L.; Ford, A.F.; Nelson,D.; Torney, D.C.; Hildebrand, C. E.; Moyzis, R. K. (1991). Evolution and ditribution of (GT) n repetitive sequences in mammalian genomes. Genomics. 10: 807-815.
- A E. 2000. Animal Genetic Resources of India Cattle and Buffalo. 6:19-215.
- Tantia M S, Vijh P K, Vijh R K, Kumar P, Joshi B K, Nivsarkar A E abd Sahai R. 1996. Siri: The Cattle of Eastern Himalayas. Animal Genetic Resources Information 19: 41-49.
- Tantia MS Vijh R K Mishra Bina Bharani K and Arora R(2006). Multilocus genotyping to study the population structure in three buffalo populations of India. Asian Austalsian Journal of Animal Sciences 19: 1070-1078.
- Tautz D (1989) Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res 17: 6463-6471.
- Tonhati, H., Vascocellos, F,B., Alburque,L.G.,2000.Genetic aspects of productive & reproductive traits in a Murrah buffalo herd in Sao Paulo,Brazil,J.Anim.Breed, genet,117,331-339.
- Van Hooft WF, Hanotte O, Wenink PW, Groen AF, Sugimoto Y, Prins HH, Teale A. Applicability of bovine microsatellite markers for population genetic studies on African buffalo (Syncerus caffer). Anim Genet. 1999 Jun; 30(3): 214-20.
- Weber, W. and Wong, C. (1993) Human Molecular Genetics, 2:1123-1128. Weissenbach et al. (1992).”A second generation linkage map of human genome,” nature, 359(6390): 794-801
- Wright, S. 1965. The interpretation of population structure by F-statistics with special regard to systems of mating. Evolution 19: 395-420.
- Yeh F. C., Boyle T., Rongcai Y., Ye Z. and Xian J. M. 1999 POPGENE version 3.1 (http://www.ualberta.ca/-fyeh/fyeh).
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